1knb

From PDBWiki

Authors	Xia, D. Henry, L.J. Gerard, R.D. Deisenhofer, J.
Citation	Crystal structure of the receptor-binding domain of adenovirus type 5 fiber protein at 1.7 A resolution.
Release date	2003-04-01
Exp. Method	X-RAY DIFFRACTION
Resolution	1.7 Å
Classification	CELL RECEPTOR RECOGNITION

Sequence

Chain A (196 residues): Blast Uniprot

TGAITVGNKNNDKLTLWTTPAPSPNCRLNAEKDAKLTLVLTKCGSQILATVSVLAVKGSLAPISGTVQSAHLIIRFDENG
VLLNNSFLDPEYWNFRNGDLTEGTAYTNAVGFMPNLSAYPKSHGKTAKSNIVSQVYLNGDKTKPVTLTITLNGTQETGDT
TPSAYSMSFSWDWSGHNYINEIFATSSYTFSYIAQE

User comments

Errors in PDB file

Source: [1]

In this structure, all the strands are anti-parallel. But in its PDB files:

SHEET    1   V 6 THR   400  TRP   402  0
SHEET    2   V 6 ASP   418  LYS   427  1
SHEET    3   V 6 SER   430  ALA   440  1
SHEET    4   V 6 ASN   479  ASN   482  1
SHEET    5   V 6 LEU   485  THR   486  1
SHEET    6   V 6 TYR   573  TYR   577  1
SHEET    1   R 4 SER   454  PHE   461  0
SHEET    2   R 4 ASN   515  TYR   521  1
SHEET    3   R 4 LYS   528  THR   535  1
SHEET    4   R 4 TYR   550  TRP   556  1

The senses of the strands are all incorrectly labelled as parallel as indicated in col 39-40. They should be labelled as "-1".

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