Feedback and suggestions

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Tell us what you think about PDBWiki. To add feedback or suggestions edit this page or click the '+' button above. To contact the authors, send email to info@pdbwiki.org.

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[edit] More stuff!

Why can't this site have more stuff? --Dan 02:38, 27 August 2007 (KST)

  • For example, can we categorize structures by publication? It would be nice to be able to browse structures by publication type, journal, author and paper. --Dan 02:48, 27 August 2007 (KST)
  • OK, and how about implementing family classification? No good simple 'protein name' ontology exists that I know of... Something like KOG, but for whole proteins. --Dan 02:48, 27 August 2007 (KST)
  • Can we implement 'error templates' - a series of templates that mark structures with specific 'errors', such as being Ca only or having other problems. This would be the first steps towards developing standardized datasets for protein structure analysis. --Dan 02:57, 27 August 2007 (KST)


Hi Dan, Can you add a visualizer that opens within Mediawiki? - Jong

Hey Jong... I think we already did... Can you see http://wiki.jmol.org:81/index.php/MediaWiki ? - Dan.


[edit] Curation of Biological Units

I was wondering if a link to PiQSi could be added for each structure to get info on the biological units: e.g: http://www.supfam.org/elevy/piqsi/piqsi_get.cgi?code=1msd

  • Done --Henning 03:28, 30 January 2008 (KST)

PDBwiki is a cool idea! I don't remember seeing a post on the PDB mailing list - maybe it could be advertised?

  • There are still some issues to be fixed but we plan to announce it soon --Henning 03:28, 30 January 2008 (KST)

[edit] Server slow ?

I don't know if it's only now or if it's my connection but the response time of the server seems quite slow.

  • One possible reason for this can be that the server is in Korea and overseas traffic is slow --Henning 03:28, 30 January 2008 (KST)

[edit] Remove duplicate chains?

I noticed that new entries have duplicate chains grouped together into one 'entity'. Can you 'update' all the old entries to the new format? What / where is the 'development timetable' ? --Dan 18:13, 6 September 2008 (KST)

[edit] Structurally similar proteins?

How can I use PDBWiki to find proteins that are structurally similar to a given PDB ID? --134.36.64.135 16:50, 26 September 2008 (KST)

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